Variant report

Variant	rs2815182
Chromosome Location	chr9:17153969-17153970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs10465046	0.87[ASN][1000 genomes]
rs10511633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10756867	0.81[JPT][hapmap]
rs10810764	0.82[JPT][hapmap]
rs10962897	0.81[AMR][1000 genomes]
rs10962898	0.81[AMR][1000 genomes]
rs10962909	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10962918	0.82[ASN][1000 genomes]
rs10962922	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10962923	0.86[ASN][1000 genomes]
rs10962924	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10962925	0.83[ASN][1000 genomes]
rs10962926	0.81[ASN][1000 genomes]
rs10962927	0.81[ASN][1000 genomes]
rs10962928	0.83[ASN][1000 genomes]
rs10962932	0.82[ASN][1000 genomes]
rs10962933	0.82[ASN][1000 genomes]
rs10962938	0.82[ASN][1000 genomes]
rs10962939	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs10962940	0.82[ASN][1000 genomes]
rs10962941	0.82[ASN][1000 genomes]
rs10962942	0.82[ASN][1000 genomes]
rs10962960	0.80[ASN][1000 genomes]
rs1113379	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1113380	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11525918	0.82[ASN][1000 genomes]
rs11531656	0.82[ASN][1000 genomes]
rs11534160	0.83[ASN][1000 genomes]
rs11562139	0.81[ASN][1000 genomes]
rs12000610	0.81[ASN][1000 genomes]
rs12235987	0.81[ASN][1000 genomes]
rs12237892	0.82[ASN][1000 genomes]
rs12238753	0.82[ASN][1000 genomes]
rs1413418	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1413419	1.00[JPT][hapmap]
rs1576958	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1576959	0.82[ASN][1000 genomes]
rs1582029	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs1759452	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759453	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759457	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1759458	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1759459	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759460	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759462	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759463	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1759464	1.00[JPT][hapmap]
rs1759465	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs1759616	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1819484	0.82[ASN][1000 genomes]
rs1930592	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1930594	0.80[AMR][1000 genomes]
rs1930639	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1930641	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2039413	0.92[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2044119	0.81[JPT][hapmap]
rs2104915	0.82[EUR][1000 genomes]
rs2151289	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2183502	0.80[AMR][1000 genomes]
rs2774621	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2774622	0.94[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2774623	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2774626	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs2774629	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2779761	0.81[AMR][1000 genomes]
rs2779763	0.88[CEU][hapmap];0.92[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2779766	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779767	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2779768	0.82[AMR][1000 genomes]
rs2779769	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2779771	0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2779772	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2780204	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2780205	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2815173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2815174	0.82[AMR][1000 genomes]
rs2815176	0.84[AMR][1000 genomes]
rs2815177	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2815179	0.86[YRI][hapmap];0.80[AMR][1000 genomes]
rs2815180	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2815181	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2815183	0.83[AMR][1000 genomes]
rs2815184	0.82[AMR][1000 genomes]
rs3119847	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3119848	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3122360	0.94[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3808785	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs3814137	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3814138	0.81[ASN][1000 genomes]
rs3814139	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs3891457	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4128606	0.94[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4147023	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4430173	0.82[ASN][1000 genomes]
rs4621917	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4961529	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961530	0.87[AMR][1000 genomes]
rs4961534	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs585682	0.83[CHB][hapmap];0.93[JPT][hapmap]
rs600041	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs600133	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs601960	0.83[CHB][hapmap];0.92[JPT][hapmap]
rs613966	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs614412	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs614471	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs632176	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs634383	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs634446	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs642582	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs646025	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs647013	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6475109	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6475113	0.81[AMR][1000 genomes]
rs6475114	0.87[AMR][1000 genomes]
rs6475115	0.83[CEU][hapmap];0.86[YRI][hapmap];0.87[AMR][1000 genomes]
rs6475122	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6475124	0.82[ASN][1000 genomes]
rs6475125	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6475129	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs6475141	0.81[JPT][hapmap]
rs6475144	0.81[JPT][hapmap]
rs654521	0.81[JPT][hapmap]
rs664447	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs673587	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs679666	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs7020918	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs7021738	0.86[ASN][1000 genomes]
rs7025912	0.83[ASN][1000 genomes]
rs7028249	0.82[AMR][1000 genomes]
rs7030801	0.82[CEU][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes]
rs7031133	0.81[JPT][hapmap]
rs7034418	0.81[AMR][1000 genomes]
rs7034768	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7035318	0.82[ASN][1000 genomes]
rs7035386	0.82[ASN][1000 genomes]
rs7035525	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7037408	0.81[ASN][1000 genomes]
rs7040098	0.83[ASN][1000 genomes]
rs7040666	0.81[ASN][1000 genomes]
rs7043703	0.92[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7044254	0.83[ASN][1000 genomes]
rs7044783	0.82[ASN][1000 genomes]
rs7046327	0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7046951	0.81[ASN][1000 genomes]
rs7850279	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7864296	0.88[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7870101	0.81[JPT][hapmap]
rs7870682	0.82[CEU][hapmap]
rs7873708	0.82[JPT][hapmap]
rs870270	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9407787	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9407788	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17135800-17154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:17135800-17155200	Weak transcription	Spleen	Spleen
3	chr9:17136000-17155200	Weak transcription	Fetal Intestine Large	intestine
4	chr9:17136000-17161000	Weak transcription	Psoas Muscle	Psoas
5	chr9:17136200-17154600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:17136200-17155200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:17136200-17157600	Weak transcription	Fetal Thymus	thymus
8	chr9:17136200-17159200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:17136200-17159600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:17136400-17154800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:17136400-17156600	Weak transcription	NHLF	lung
12	chr9:17136400-17159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:17136400-17163800	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:17136400-17164200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr9:17136600-17154400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:17136600-17154800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr9:17136800-17154000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:17136800-17159000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr9:17137800-17160400	Weak transcription	Hela-S3	cervix
20	chr9:17140000-17154000	Weak transcription	Fetal Stomach	stomach
21	chr9:17142800-17154200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:17144200-17155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:17144400-17154400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr9:17146200-17167200	Weak transcription	Gastric	stomach
25	chr9:17146400-17155000	Weak transcription	A549	lung
26	chr9:17146600-17155600	Weak transcription	Brain Hippocampus Middle	brain
27	chr9:17146600-17159200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:17146600-17160000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:17147400-17155000	Weak transcription	Left Ventricle	heart
30	chr9:17148400-17154200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:17148600-17154000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr9:17148600-17157600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:17148600-17159000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:17148800-17154400	Weak transcription	Ovary	ovary
35	chr9:17148800-17155000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:17148800-17155200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:17148800-17155200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr9:17148800-17157000	Weak transcription	Fetal Heart	heart
39	chr9:17148800-17157800	Weak transcription	Osteobl	bone
40	chr9:17148800-17159400	Weak transcription	Fetal Kidney	kidney
41	chr9:17148800-17167400	Weak transcription	Dnd41	blood
42	chr9:17149000-17154000	Weak transcription	Fetal Lung	lung
43	chr9:17149000-17154400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:17149000-17154400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr9:17149200-17154000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr9:17149200-17154000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:17149200-17154400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:17149200-17158000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:17149400-17154200	Weak transcription	Liver	Liver
50	chr9:17149400-17167400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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