Variant report

Variant	rs2779766
Chromosome Location	chr9:17178366-17178367
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10465046	0.82[ASN][1000 genomes]
rs10511633	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10962909	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10962922	0.81[ASN][1000 genomes]
rs10962923	0.81[ASN][1000 genomes]
rs10962924	0.81[ASN][1000 genomes]
rs12237062	0.80[AFR][1000 genomes]
rs1930592	0.91[EUR][1000 genomes]
rs2039413	0.84[ASN][1000 genomes]
rs2151289	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2774621	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2774622	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2774623	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2774626	0.83[AMR][1000 genomes]
rs2774629	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2779763	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2779767	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2779771	0.85[AMR][1000 genomes]
rs2779772	0.85[AMR][1000 genomes]
rs2815173	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2815175	0.82[AFR][1000 genomes]
rs2815177	0.93[ASN][1000 genomes]
rs2815181	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2815182	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3119847	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3119848	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3122360	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4128606	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961529	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4961530	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4961534	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6475109	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6475114	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6475115	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7021738	0.81[ASN][1000 genomes]
rs7030801	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7850279	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7864296	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7870682	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9407787	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17156200-17178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:17159800-17195600	Weak transcription	Aorta	Aorta
3	chr9:17169600-17181800	Weak transcription	Fetal Lung	lung
4	chr9:17172200-17193600	Weak transcription	Pancreas	Pancrea
5	chr9:17174000-17188200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:17177000-17181800	Weak transcription	Gastric	stomach
7	chr9:17177200-17185200	Weak transcription	Fetal Heart	heart
8	chr9:17177400-17178400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:17177400-17178600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr9:17177400-17178800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr9:17177400-17179000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:17177400-17179000	ZNF genes & repeats	Fetal Stomach	stomach
13	chr9:17177600-17178600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:17178200-17178600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:17178200-17178600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr9:17178200-17179000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:17178200-17179000	ZNF genes & repeats	Brain Germinal Matrix	brain

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