Variant report

Variant	rs2779767
Chromosome Location	chr9:17172200-17172201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 164 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:151)

rs_ID	r²[population]
rs10465046	0.88[ASN][1000 genomes]
rs10511633	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962886	0.82[EUR][1000 genomes]
rs10962897	0.84[AMR][1000 genomes]
rs10962898	0.84[AMR][1000 genomes]
rs10962909	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10962918	0.83[ASN][1000 genomes]
rs10962922	0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10962923	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10962924	0.87[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10962925	0.84[ASN][1000 genomes]
rs10962926	0.82[ASN][1000 genomes]
rs10962927	0.82[ASN][1000 genomes]
rs10962928	0.84[ASN][1000 genomes]
rs10962932	0.83[ASN][1000 genomes]
rs10962933	0.83[ASN][1000 genomes]
rs10962938	0.83[ASN][1000 genomes]
rs10962939	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10962940	0.83[ASN][1000 genomes]
rs10962941	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs10962942	0.83[ASN][1000 genomes]
rs10962960	0.81[ASN][1000 genomes]
rs1113379	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1113380	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs11525918	0.83[ASN][1000 genomes]
rs11531656	0.83[ASN][1000 genomes]
rs11534160	0.84[ASN][1000 genomes]
rs11562139	0.82[ASN][1000 genomes]
rs12000610	0.82[ASN][1000 genomes]
rs12235987	0.82[ASN][1000 genomes]
rs12237892	0.83[ASN][1000 genomes]
rs12238753	0.83[ASN][1000 genomes]
rs13288412	0.80[ASN][1000 genomes]
rs13289731	0.80[ASN][1000 genomes]
rs1413418	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1413419	0.83[JPT][hapmap]
rs1576957	0.80[AMR][1000 genomes]
rs1576958	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1576959	0.83[ASN][1000 genomes]
rs1582029	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1759452	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759453	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759457	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs1759458	0.82[JPT][hapmap]
rs1759459	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759460	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759462	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759463	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1759464	0.81[JPT][hapmap]
rs1759465	0.81[JPT][hapmap]
rs1759616	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1819484	0.83[ASN][1000 genomes]
rs1930592	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1930594	0.84[AMR][1000 genomes]
rs1930639	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs1930641	0.82[JPT][hapmap]
rs2039413	0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs2104915	0.85[EUR][1000 genomes]
rs2151289	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2210539	0.81[EUR][1000 genomes]
rs2774621	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2774622	0.90[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2774623	0.95[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2774626	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs2774629	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2779761	0.84[AMR][1000 genomes]
rs2779763	0.84[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2779766	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2779768	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2779769	0.83[AMR][1000 genomes]
rs2779771	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs2779772	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs2780204	0.82[JPT][hapmap]
rs2780205	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2815173	0.94[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2815174	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2815176	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2815177	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2815180	0.83[AMR][1000 genomes]
rs2815181	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2815182	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2815183	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2815184	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3119847	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3119848	0.84[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3122360	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3808785	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs3814137	0.86[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3814138	0.82[ASN][1000 genomes]
rs3814139	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3891457	0.90[JPT][hapmap]
rs4128606	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4147023	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4430173	0.83[ASN][1000 genomes]
rs4621917	0.82[JPT][hapmap]
rs4961529	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4961530	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4961531	0.83[AMR][1000 genomes]
rs4961534	0.84[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs585682	0.81[JPT][hapmap]
rs59047675	0.82[AMR][1000 genomes]
rs600041	0.82[JPT][hapmap]
rs600133	0.82[JPT][hapmap]
rs613966	0.82[JPT][hapmap]
rs614412	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs614471	0.82[JPT][hapmap]
rs632176	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs634383	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs634446	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs642582	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs646025	0.82[JPT][hapmap]
rs647013	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs6475109	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6475113	0.84[AMR][1000 genomes]
rs6475114	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6475115	0.90[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6475122	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6475124	0.83[ASN][1000 genomes]
rs6475125	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs6475129	0.82[JPT][hapmap]
rs664447	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs673587	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs679666	0.81[JPT][hapmap]
rs7020918	0.87[CHB][hapmap];0.83[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs7021738	0.87[ASN][1000 genomes]
rs7025912	0.84[ASN][1000 genomes]
rs7028249	0.83[AMR][1000 genomes]
rs7030801	0.82[AMR][1000 genomes]
rs7034418	0.84[AMR][1000 genomes]
rs7034768	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7035318	0.83[ASN][1000 genomes]
rs7035386	0.83[ASN][1000 genomes]
rs7035525	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs7037408	0.82[ASN][1000 genomes]
rs7040098	0.84[ASN][1000 genomes]
rs7040666	0.82[ASN][1000 genomes]
rs7042700	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7043703	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7044254	0.84[ASN][1000 genomes]
rs7044783	0.83[ASN][1000 genomes]
rs7046327	0.86[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7046951	0.82[ASN][1000 genomes]
rs7048983	0.83[AMR][1000 genomes]
rs7850279	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7854322	0.82[AMR][1000 genomes]
rs7864296	0.84[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7865807	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs7870682	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs870270	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs9407787	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9407788	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17156200-17177400	Weak transcription	Fetal Stomach	stomach
2	chr9:17156200-17178200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr9:17156200-17178800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:17159800-17195600	Weak transcription	Aorta	Aorta
5	chr9:17168000-17172800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:17169600-17173400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:17169600-17181800	Weak transcription	Fetal Lung	lung
8	chr9:17171600-17172200	Enhancers	Right Ventricle	heart
9	chr9:17171800-17172200	Genic enhancers	Pancreas	Pancrea
10	chr9:17171800-17172200	Flanking Active TSS	HepG2	liver
11	chr9:17171800-17177600	Weak transcription	Liver	Liver
12	chr9:17172000-17172400	Enhancers	Psoas Muscle	Psoas
13	chr9:17172000-17178200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:17172200-17172400	Enhancers	HepG2	liver
15	chr9:17172200-17193600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links