Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1449027	0.91[ASN][1000 genomes]
rs1562672	0.81[YRI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1975601	0.81[YRI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2595232	0.89[ASN][1000 genomes]
rs2595236	0.91[ASN][1000 genomes]
rs2595238	0.92[ASN][1000 genomes]
rs2595239	0.90[ASN][1000 genomes]
rs2595242	0.96[ASN][1000 genomes]
rs2595243	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2595244	0.81[YRI][hapmap]
rs2595245	0.82[YRI][hapmap]
rs2595247	0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2595248	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2595250	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2621280	0.83[EUR][1000 genomes]
rs2621282	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2621284	0.94[ASN][1000 genomes]
rs2621290	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2621294	0.91[ASN][1000 genomes]
rs2621295	0.92[ASN][1000 genomes]
rs2621297	0.81[YRI][hapmap]
rs2621299	0.82[YRI][hapmap]
rs2621300	0.82[YRI][hapmap]
rs2621306	0.92[ASN][1000 genomes]
rs2621310	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2621313	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621314	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35192832	0.94[ASN][1000 genomes]
rs73166218	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1012602	chr3:158800182-159031618	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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