Variant report

Variant	rs2597085
Chromosome Location	chr14:81100902-81100903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10130406	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10130415	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10130508	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10130522	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10131100	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10136394	0.87[ASN][1000 genomes]
rs10139763	0.85[ASN][1000 genomes]
rs10140109	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10143228	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10146465	0.89[ASN][1000 genomes]
rs10146576	0.90[ASN][1000 genomes]
rs10146659	0.89[ASN][1000 genomes]
rs10146748	0.86[ASN][1000 genomes]
rs10147245	0.87[ASN][1000 genomes]
rs10150384	0.82[YRI][hapmap];0.89[ASN][1000 genomes]
rs10151209	0.90[ASN][1000 genomes]
rs11159468	0.91[ASN][1000 genomes]
rs11159469	0.86[ASN][1000 genomes]
rs11844906	0.89[ASN][1000 genomes]
rs11847664	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12588381	0.87[ASN][1000 genomes]
rs12889844	0.84[ASN][1000 genomes]
rs1547499	0.91[ASN][1000 genomes]
rs1547500	0.91[ASN][1000 genomes]
rs17110914	0.86[ASN][1000 genomes]
rs17110923	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17110926	0.86[ASN][1000 genomes]
rs17110955	0.87[ASN][1000 genomes]
rs1972298	0.91[ASN][1000 genomes]
rs2167148	0.91[ASN][1000 genomes]
rs2597083	0.90[ASN][1000 genomes]
rs2619667	0.91[ASN][1000 genomes]
rs58902662	0.81[ASN][1000 genomes]
rs61429001	0.81[ASN][1000 genomes]
rs61979379	0.86[ASN][1000 genomes]
rs61979380	0.81[ASN][1000 genomes]
rs6574594	0.83[ASN][1000 genomes]
rs6574595	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7140355	0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs7140933	0.90[ASN][1000 genomes]
rs7148223	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7148754	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7148885	0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7149459	0.86[ASN][1000 genomes]
rs7153484	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7157843	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160749	0.89[ASN][1000 genomes]
rs8008043	0.90[ASN][1000 genomes]
rs8010347	0.89[ASN][1000 genomes]
rs8012237	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
4	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
5	chr14:81100400-81101200	Enhancers	Hela-S3	cervix
6	chr14:81100400-81105600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:81100600-81103800	Weak transcription	Osteobl	bone
8	chr14:81100600-81104200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:81100600-81104800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:81100800-81104000	Weak transcription	NHDF-Ad	bronchial
11	chr14:81100800-81104000	Weak transcription	NHEK	skin

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