Variant report

Variant	rs58902662
Chromosome Location	chr14:81113872-81113873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10130406	0.83[ASN][1000 genomes]
rs10130415	0.82[ASN][1000 genomes]
rs10130508	0.89[ASN][1000 genomes]
rs10130522	0.89[ASN][1000 genomes]
rs10131100	0.89[ASN][1000 genomes]
rs10136394	0.92[ASN][1000 genomes]
rs10139763	0.93[ASN][1000 genomes]
rs10140109	0.93[ASN][1000 genomes]
rs10143228	0.89[ASN][1000 genomes]
rs10146465	0.90[ASN][1000 genomes]
rs10146576	0.89[ASN][1000 genomes]
rs10146659	0.90[ASN][1000 genomes]
rs10146748	0.88[ASN][1000 genomes]
rs10147245	0.92[ASN][1000 genomes]
rs10150384	0.90[ASN][1000 genomes]
rs10151209	0.89[ASN][1000 genomes]
rs11159468	0.90[ASN][1000 genomes]
rs11159469	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11844906	0.90[ASN][1000 genomes]
rs11847664	0.87[ASN][1000 genomes]
rs12588381	0.88[ASN][1000 genomes]
rs12889844	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1547499	0.90[ASN][1000 genomes]
rs1547500	0.90[ASN][1000 genomes]
rs17110851	0.80[ASN][1000 genomes]
rs17110854	0.82[ASN][1000 genomes]
rs17110914	0.95[ASN][1000 genomes]
rs17110923	0.89[ASN][1000 genomes]
rs17110926	0.95[ASN][1000 genomes]
rs17110955	0.92[ASN][1000 genomes]
rs1868546	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1972298	0.90[ASN][1000 genomes]
rs2167148	0.90[ASN][1000 genomes]
rs2596116	0.92[AMR][1000 genomes]
rs2596117	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2597083	0.89[ASN][1000 genomes]
rs2597085	0.81[ASN][1000 genomes]
rs35505520	0.82[ASN][1000 genomes]
rs61429001	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979379	0.95[ASN][1000 genomes]
rs61979380	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979382	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574594	0.98[ASN][1000 genomes]
rs6574595	0.91[ASN][1000 genomes]
rs6574597	0.82[ASN][1000 genomes]
rs7140355	0.89[ASN][1000 genomes]
rs7140933	0.89[ASN][1000 genomes]
rs7148223	0.89[ASN][1000 genomes]
rs7148754	0.89[ASN][1000 genomes]
rs7148885	0.89[ASN][1000 genomes]
rs7149459	0.95[ASN][1000 genomes]
rs7153484	0.89[ASN][1000 genomes]
rs7157843	0.89[ASN][1000 genomes]
rs7160749	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8008043	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8010347	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8012237	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1039554	chr14:81113167-81156335	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv1051964	chr14:81113167-81156847	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81106200-81135400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:81108200-81145800	Weak transcription	Fetal Thymus	thymus
3	chr14:81108600-81116800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr14:81110600-81124600	Weak transcription	Dnd41	blood
5	chr14:81110800-81124400	Weak transcription	Brain Substantia Nigra	brain

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