Variant report

Variant	rs17110851
Chromosome Location	chr14:81082350-81082351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10135604	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs10139763	0.92[EUR][1000 genomes]
rs10145319	0.87[ASN][1000 genomes]
rs10146465	0.93[JPT][hapmap]
rs10150384	0.90[JPT][hapmap]
rs10498544	0.80[EUR][1000 genomes]
rs11159468	0.89[JPT][hapmap]
rs11159469	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11844906	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12587285	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12878113	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs12881248	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12886241	0.80[EUR][1000 genomes]
rs12889844	0.82[ASN][1000 genomes]
rs1547499	0.89[JPT][hapmap]
rs1547500	0.89[JPT][hapmap]
rs17110854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17110914	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110923	0.88[JPT][hapmap]
rs17110926	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2290168	0.81[CEU][hapmap]
rs2597083	0.82[JPT][hapmap]
rs2619659	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs34019777	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34481438	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34489190	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34536975	0.87[EUR][1000 genomes]
rs34946091	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35038680	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35426127	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35505520	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35930082	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56256007	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58902662	0.80[ASN][1000 genomes]
rs61429001	0.80[ASN][1000 genomes]
rs61979379	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61979380	0.80[ASN][1000 genomes]
rs61981704	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61981706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574594	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67116258	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7140355	0.89[JPT][hapmap]
rs7144224	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7148885	0.89[JPT][hapmap]
rs7149459	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7153484	0.89[JPT][hapmap]
rs7157843	0.89[JPT][hapmap]
rs7160749	0.94[JPT][hapmap]
rs8008043	0.89[JPT][hapmap]
rs8010347	0.89[JPT][hapmap]
rs8016151	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs8017175	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81076200-81086600	Weak transcription	A549	lung
2	chr14:81082200-81083400	Enhancers	Dnd41	blood

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