Variant report

Variant	rs61981704
Chromosome Location	chr14:81072944-81072945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81071464..81074082-chr14:81074931..81076557,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10135604	0.94[ASN][1000 genomes]
rs10139763	0.91[EUR][1000 genomes]
rs10145319	0.97[ASN][1000 genomes]
rs10149210	0.82[ASN][1000 genomes]
rs10498544	0.81[EUR][1000 genomes]
rs11844906	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12587285	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12878113	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12881248	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12886241	0.81[EUR][1000 genomes]
rs17110851	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17110854	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17110914	0.93[EUR][1000 genomes]
rs17110926	0.94[EUR][1000 genomes]
rs2290168	0.82[EUR][1000 genomes]
rs34019777	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34481438	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34489190	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34536975	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34946091	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35038680	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35426127	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35505520	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35930082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56256007	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61979379	0.94[EUR][1000 genomes]
rs61981706	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6574594	0.94[EUR][1000 genomes]
rs67116258	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144224	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7149459	0.94[EUR][1000 genomes]
rs8016151	0.94[ASN][1000 genomes]
rs8017175	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81062200-81082200	Weak transcription	Dnd41	blood
2	chr14:81069600-81073800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:81071800-81073000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:81072000-81073000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr14:81072000-81073000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr14:81072000-81073000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr14:81072000-81073000	Enhancers	Fetal Lung	lung
8	chr14:81072000-81073200	Enhancers	Brain Hippocampus Middle	brain
9	chr14:81072200-81075800	Weak transcription	Ovary	ovary
10	chr14:81072200-81075800	Weak transcription	NHLF	lung
11	chr14:81072400-81073000	Enhancers	Brain Substantia Nigra	brain
12	chr14:81072600-81073000	Enhancers	Brain Cingulate Gyrus	brain
13	chr14:81072600-81073000	Enhancers	A549	lung
14	chr14:81072600-81073200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:81072600-81073200	Enhancers	Brain Angular Gyrus	brain
16	chr14:81072600-81073200	Enhancers	Fetal Brain Male	brain
17	chr14:81072600-81074800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:81072800-81073200	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr14:81072800-81073800	Weak transcription	Stomach Mucosa	stomach

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