Variant report

Variant	rs34489190
Chromosome Location	chr14:81043795-81043796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:81033414..81035767-chr14:81040796..81044689,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10135604	0.97[ASN][1000 genomes]
rs10139763	0.89[EUR][1000 genomes]
rs10145319	0.97[ASN][1000 genomes]
rs10149210	0.88[ASN][1000 genomes]
rs10498544	0.83[EUR][1000 genomes]
rs11844906	0.91[EUR][1000 genomes]
rs12587285	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12878113	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12881248	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12886241	0.83[EUR][1000 genomes]
rs17110851	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110854	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110914	0.91[EUR][1000 genomes]
rs17110926	0.92[EUR][1000 genomes]
rs2290168	0.84[EUR][1000 genomes]
rs34019777	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34481438	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34536975	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34946091	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35038680	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35426127	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35505520	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35817733	0.82[EUR][1000 genomes]
rs35930082	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56256007	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61979379	0.92[EUR][1000 genomes]
rs61981704	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61981706	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6574594	0.92[EUR][1000 genomes]
rs67116258	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144224	0.88[EUR][1000 genomes]
rs7149459	0.92[EUR][1000 genomes]
rs8016151	1.00[ASN][1000 genomes]
rs8017175	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9323688	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81029600-81044800	Weak transcription	Dnd41	blood
2	chr14:81037000-81051000	Weak transcription	NHEK	skin
3	chr14:81037200-81050800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:81037200-81050800	Weak transcription	HMEC	breast
5	chr14:81041400-81046200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:81042800-81048400	Weak transcription	Psoas Muscle	Psoas
7	chr14:81043000-81046400	Enhancers	HepG2	liver
8	chr14:81043000-81050600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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