Variant report

Variant	rs10135604
Chromosome Location	chr14:81055341-81055342
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10136394	0.87[EUR][1000 genomes]
rs10138431	0.90[CEU][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap]
rs10140845	0.95[CEU][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs10145319	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10146465	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs10146659	0.85[EUR][1000 genomes]
rs10146748	0.85[EUR][1000 genomes]
rs10147245	0.87[EUR][1000 genomes]
rs10148083	0.84[JPT][hapmap];0.88[YRI][hapmap]
rs10149210	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10498544	0.84[JPT][hapmap]
rs11159469	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs12587285	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.94[ASN][1000 genomes]
rs12878113	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12881248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12886241	0.84[JPT][hapmap]
rs12889844	0.89[EUR][1000 genomes]
rs17110851	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs17110854	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17110955	0.87[EUR][1000 genomes]
rs2290168	0.84[JPT][hapmap]
rs2619659	0.89[CHB][hapmap]
rs34019777	0.97[ASN][1000 genomes]
rs34481438	0.80[ASN][1000 genomes]
rs34489190	0.97[ASN][1000 genomes]
rs34946091	0.95[ASN][1000 genomes]
rs35038680	0.94[ASN][1000 genomes]
rs35426127	0.94[ASN][1000 genomes]
rs35505520	0.85[ASN][1000 genomes]
rs35930082	0.94[ASN][1000 genomes]
rs55670336	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56256007	0.82[ASN][1000 genomes]
rs61981704	0.94[ASN][1000 genomes]
rs61981706	0.88[ASN][1000 genomes]
rs6574594	0.81[CHD][hapmap]
rs67116258	0.94[ASN][1000 genomes]
rs7149459	0.81[CHD][hapmap]
rs7160604	0.80[JPT][hapmap]
rs7160749	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs8008043	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs8010347	0.85[CEU][hapmap];0.81[MEX][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs8016151	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017020	0.88[YRI][hapmap]
rs8017175	0.85[ASN][1000 genomes]
rs9323688	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv902116	chr14:81018237-81082400	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10135604	C14orf145	cis	cerebellum	SCAN
rs10135604	C14orf145	cis	parietal	SCAN
rs10135604	TSC22D3	trans	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81052400-81070000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:81052800-81057200	Weak transcription	Hela-S3	cervix
3	chr14:81054200-81056400	Weak transcription	Primary T cells from cord blood	blood
4	chr14:81054400-81061400	Weak transcription	Dnd41	blood

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