Variant report

Variant	rs17110914
Chromosome Location	chr14:81099867-81099868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10130406	0.88[ASN][1000 genomes]
rs10130415	0.87[ASN][1000 genomes]
rs10130508	0.94[ASN][1000 genomes]
rs10130522	0.94[ASN][1000 genomes]
rs10131100	0.94[ASN][1000 genomes]
rs10136394	0.94[ASN][1000 genomes]
rs10139763	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10140109	0.92[ASN][1000 genomes]
rs10143228	0.94[ASN][1000 genomes]
rs10146465	0.81[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs10146576	0.94[ASN][1000 genomes]
rs10146659	0.95[ASN][1000 genomes]
rs10146748	0.93[ASN][1000 genomes]
rs10147245	0.94[ASN][1000 genomes]
rs10150384	0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10151209	0.94[ASN][1000 genomes]
rs11159468	0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs11159469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11844906	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11847664	0.93[ASN][1000 genomes]
rs12587285	0.86[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs12588381	0.90[ASN][1000 genomes]
rs12878113	0.93[CEU][hapmap];0.85[EUR][1000 genomes]
rs12881248	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs12889844	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1547499	0.91[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs1547500	0.90[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs17110851	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17110854	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17110923	0.89[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs17110926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110955	0.94[ASN][1000 genomes]
rs1868546	0.89[ASN][1000 genomes]
rs1972298	0.95[ASN][1000 genomes]
rs2167148	0.95[ASN][1000 genomes]
rs2290168	0.81[CEU][hapmap]
rs2596117	0.87[ASN][1000 genomes]
rs2597083	0.90[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs2597085	0.86[ASN][1000 genomes]
rs2619659	0.90[JPT][hapmap]
rs2619667	0.80[ASN][1000 genomes]
rs34019777	0.94[EUR][1000 genomes]
rs34481438	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34489190	0.91[EUR][1000 genomes]
rs34536975	0.83[EUR][1000 genomes]
rs34946091	0.94[EUR][1000 genomes]
rs35038680	0.94[EUR][1000 genomes]
rs35426127	0.86[EUR][1000 genomes]
rs35505520	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35930082	0.93[EUR][1000 genomes]
rs56256007	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58902662	0.95[ASN][1000 genomes]
rs61429001	0.95[ASN][1000 genomes]
rs61979379	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979380	0.95[ASN][1000 genomes]
rs61979382	0.89[ASN][1000 genomes]
rs61981704	0.93[EUR][1000 genomes]
rs61981706	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6574594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6574595	0.90[ASN][1000 genomes]
rs67116258	0.94[EUR][1000 genomes]
rs7140355	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7140933	0.94[ASN][1000 genomes]
rs7144224	0.93[EUR][1000 genomes]
rs7148223	0.94[ASN][1000 genomes]
rs7148754	0.94[ASN][1000 genomes]
rs7148885	0.95[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7149459	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153484	0.91[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7157843	0.90[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs7160749	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs8008043	1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[ASN][1000 genomes]
rs8010347	1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8012237	0.94[ASN][1000 genomes]
rs8017175	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv565290	chr14:81085129-81230117	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81083400-81109400	Weak transcription	Dnd41	blood
2	chr14:81087400-81104200	Weak transcription	HSMM	muscle
3	chr14:81099000-81106200	Weak transcription	Psoas Muscle	Psoas
4	chr14:81099000-81109600	Weak transcription	Thymus	Thymus
5	chr14:81099400-81100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:81099800-81100400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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