Variant report

Variant	rs2607730
Chromosome Location	chr6:70293201-70293202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2572991	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2757757	0.94[ASN][1000 genomes]
rs2757758	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs310259	0.86[ASN][1000 genomes]
rs310260	0.93[ASN][1000 genomes]
rs34857559	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4707218	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6904921	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs9351764	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9364032	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9364033	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2607730	RNF113B	trans	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70288800-70293600	Weak transcription	HSMMtube	muscle
2	chr6:70289000-70294400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:70289000-70294400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:70291200-70293400	Weak transcription	Fetal Heart	heart
5	chr6:70291600-70294400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:70291800-70294800	Weak transcription	Fetal Brain Male	brain
7	chr6:70292200-70294400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:70292800-70296200	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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