Variant report

Variant	rs34857559
Chromosome Location	chr6:70314197-70314198
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13206442	0.90[ASN][1000 genomes]
rs16867832	0.81[AFR][1000 genomes]
rs2572991	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2607730	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2757757	0.84[ASN][1000 genomes]
rs2757758	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs310260	0.83[ASN][1000 genomes]
rs310267	0.86[ASN][1000 genomes]
rs4707218	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6908194	0.96[EUR][1000 genomes]
rs9346314	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9351764	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9364032	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9364033	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022847	chr6:70300521-70337899	Enhancers Bivalent Enhancer Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70311400-70314200	Weak transcription	Brain Substantia Nigra	brain
2	chr6:70312600-70314200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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