Variant report

Variant	rs2611206
Chromosome Location	chr4:166579647-166579648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1246907	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1246917	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1246919	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1350614	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1380348	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1459499	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2611208	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2611210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2611242	0.82[EUR][1000 genomes]
rs2714808	1.00[EUR][1000 genomes]
rs2714832	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3843405	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs922098	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs963718	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs971710	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166578200-166581800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:166578400-166583600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:166578600-166583600	Weak transcription	HepG2	liver
5	chr4:166579000-166583800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:166579600-166583800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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