Variant report

Variant	rs1459499
Chromosome Location	chr4:166573703-166573704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11936380	1.00[CHB][hapmap]
rs1246907	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1246917	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1246919	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1350614	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1380348	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2611206	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2611208	0.87[EUR][1000 genomes]
rs2611210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2611242	0.87[EUR][1000 genomes]
rs2714808	0.92[EUR][1000 genomes]
rs2714832	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3843405	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs922098	0.82[EUR][1000 genomes]
rs963718	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs971710	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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