Variant report

Variant	rs2611208
Chromosome Location	chr4:166578294-166578295
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1246907	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1246917	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1246919	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1350614	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1380348	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1459499	0.87[EUR][1000 genomes]
rs2611206	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2611210	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2714808	0.96[EUR][1000 genomes]
rs2714832	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3843405	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs922098	0.84[EUR][1000 genomes]
rs963718	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs971710	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1028337	chr4:166544699-166659468	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv537338	chr4:166544699-166659468	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3486584	chr4:166565013-166680227	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3486585	chr4:166565013-166680227	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166570000-166584200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166574200-166578600	Enhancers	HepG2	liver
3	chr4:166575800-166579000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:166576200-166578800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:166576600-166579200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:166576800-166578600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:166576800-166578800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:166576800-166579000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:166577400-166578400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:166577400-166579000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:166577400-166579600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:166577600-166578800	Enhancers	HUVEC	blood vessel
13	chr4:166578000-166578400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:166578000-166578600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:166578000-166578600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:166578000-166578800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:166578000-166578800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr4:166578000-166579000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr4:166578200-166581800	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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