Variant report

Variant	rs261265
Chromosome Location	chr15:58602300-58602301
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58601847..58604621-chr15:58623351..58625569,2	MCF-7	breast:
2	chr15:58600386..58602947-chr15:58623256..58625653,2	K562	blood:
3	chr15:58595612..58601278-chr15:58601529..58605992,7	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs166357	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs185479	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs261263	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs261272	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs261273	0.95[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs397636	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs52971	0.90[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58590200-58602400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:58595800-58605000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:58599000-58603000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:58599200-58602400	Weak transcription	Left Ventricle	heart
5	chr15:58599600-58602400	Weak transcription	Brain Substantia Nigra	brain
6	chr15:58599800-58602400	Weak transcription	Placenta	Placenta
7	chr15:58599800-58604400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:58599800-58606600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:58600000-58602400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:58600000-58602400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:58600000-58602400	Weak transcription	Adipose Nuclei	Adipose
12	chr15:58600200-58602400	Weak transcription	NHEK	skin
13	chr15:58600200-58604600	Weak transcription	Fetal Kidney	kidney
14	chr15:58600600-58602400	Weak transcription	Liver	Liver
15	chr15:58601200-58602600	Enhancers	Thymus	Thymus
16	chr15:58601200-58603200	Enhancers	Esophagus	oesophagus
17	chr15:58601200-58603200	Enhancers	Fetal Thymus	thymus
18	chr15:58601400-58602400	Weak transcription	Right Atrium	heart
19	chr15:58601800-58602800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:58601800-58602800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:58601800-58603200	Enhancers	K562	blood
22	chr15:58602000-58602800	Enhancers	Brain Cingulate Gyrus	brain
23	chr15:58602000-58603000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr15:58602000-58603000	Enhancers	Spleen	Spleen
25	chr15:58602000-58603000	Enhancers	HepG2	liver
26	chr15:58602000-58603200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr15:58602200-58602400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:58602200-58602600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:58602200-58602600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:58602200-58602800	Enhancers	Brain Angular Gyrus	brain
31	chr15:58602200-58602800	Enhancers	Brain Hippocampus Middle	brain
32	chr15:58602200-58603000	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr15:58602200-58603000	Enhancers	Lung	lung
34	chr15:58602200-58603200	Enhancers	Brain Anterior Caudate	brain
35	chr15:58602200-58603200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr15:58602200-58603200	Enhancers	Right Ventricle	heart

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