Variant report

Variant	rs2615518
Chromosome Location	chr6:114117158-114117159
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114114566..114117543-chr6:114133160..114134719,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1026635	0.88[ASN][1000 genomes]
rs1026636	0.88[ASN][1000 genomes]
rs1026640	0.88[ASN][1000 genomes]
rs1031797	0.87[ASN][1000 genomes]
rs1031798	0.87[ASN][1000 genomes]
rs13209042	0.86[ASN][1000 genomes]
rs1564063	0.86[ASN][1000 genomes]
rs1585564	0.88[ASN][1000 genomes]
rs17075611	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2018090	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126461	0.87[ASN][1000 genomes]
rs2126462	0.87[ASN][1000 genomes]
rs2615508	0.86[ASN][1000 genomes]
rs2615529	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2615530	0.87[ASN][1000 genomes]
rs2615531	0.87[ASN][1000 genomes]
rs2615532	0.87[ASN][1000 genomes]
rs2615533	0.88[ASN][1000 genomes]
rs2695451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753884	0.86[ASN][1000 genomes]
rs2810179	0.88[ASN][1000 genomes]
rs2810182	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2810187	0.88[ASN][1000 genomes]
rs2810188	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2810189	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2810191	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2810195	0.86[ASN][1000 genomes]
rs2810196	0.86[ASN][1000 genomes]
rs34777588	0.82[ASN][1000 genomes]
rs4574672	0.86[ASN][1000 genomes]
rs4945503	0.87[ASN][1000 genomes]
rs55705700	0.80[ASN][1000 genomes]
rs6568807	0.86[ASN][1000 genomes]
rs6918103	0.85[ASN][1000 genomes]
rs6923574	0.84[ASN][1000 genomes]
rs6940434	0.85[ASN][1000 genomes]
rs7760821	0.85[ASN][1000 genomes]
rs7765004	0.84[ASN][1000 genomes]
rs9372374	0.83[ASN][1000 genomes]
rs9372376	0.83[ASN][1000 genomes]
rs9374426	0.84[ASN][1000 genomes]
rs9374429	0.86[ASN][1000 genomes]
rs9384882	0.85[ASN][1000 genomes]
rs9387174	0.84[ASN][1000 genomes]
rs9387176	0.84[ASN][1000 genomes]
rs9387177	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9387179	0.88[ASN][1000 genomes]
rs9398364	0.86[ASN][1000 genomes]
rs9400667	0.84[ASN][1000 genomes]
rs9400671	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400672	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9400676	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs949599	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs959211	0.87[ASN][1000 genomes]
rs963884	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114114400-114117400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:114115600-114117400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr6:114117000-114117400	Weak transcription	Rectal Mucosa Donor 31	rectum

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