Variant report

Variant	rs2810188
Chromosome Location	chr6:114146609-114146610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114145475..114147514-chr6:114178396..114179980,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1026635	0.98[ASN][1000 genomes]
rs1026636	0.98[ASN][1000 genomes]
rs1026640	0.98[ASN][1000 genomes]
rs1031797	0.97[ASN][1000 genomes]
rs1031798	0.97[ASN][1000 genomes]
rs1031800	0.80[ASN][1000 genomes]
rs13209042	0.96[ASN][1000 genomes]
rs1564063	0.96[ASN][1000 genomes]
rs1585564	0.98[ASN][1000 genomes]
rs17075611	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2018090	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2126461	0.97[ASN][1000 genomes]
rs2126462	0.97[ASN][1000 genomes]
rs2615508	0.96[ASN][1000 genomes]
rs2615518	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2615529	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2615530	0.97[ASN][1000 genomes]
rs2615531	0.97[ASN][1000 genomes]
rs2615532	0.97[ASN][1000 genomes]
rs2615533	0.98[ASN][1000 genomes]
rs2695451	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2695452	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2753884	0.96[ASN][1000 genomes]
rs2810179	0.98[ASN][1000 genomes]
rs2810182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2810187	0.98[ASN][1000 genomes]
rs2810189	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2810191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2810195	0.96[ASN][1000 genomes]
rs2810196	0.96[ASN][1000 genomes]
rs4496829	0.81[ASN][1000 genomes]
rs4945503	0.97[ASN][1000 genomes]
rs9374429	0.96[ASN][1000 genomes]
rs9387177	0.83[AMR][1000 genomes]
rs9387179	0.98[ASN][1000 genomes]
rs9398364	0.96[ASN][1000 genomes]
rs9400671	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9400672	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9400676	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs949599	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs959211	0.97[ASN][1000 genomes]
rs963884	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114141400-114146800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:114141400-114150200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:114141600-114147200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:114144400-114147800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:114144800-114147600	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:114145000-114147000	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:114145000-114147200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:114145000-114147400	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:114145000-114147400	Enhancers	Ovary	ovary
10	chr6:114145000-114147600	Enhancers	Brain Anterior Caudate	brain
11	chr6:114145000-114147800	Enhancers	Colon Smooth Muscle	Colon
12	chr6:114145000-114147800	Enhancers	Fetal Stomach	stomach
13	chr6:114145400-114147400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:114145400-114147400	Enhancers	HSMMtube	muscle
15	chr6:114145400-114147600	Enhancers	Brain Germinal Matrix	brain
16	chr6:114145400-114147600	Enhancers	Fetal Muscle Leg	muscle
17	chr6:114145600-114147200	Enhancers	Pancreas	Pancrea
18	chr6:114145600-114147400	Enhancers	Right Atrium	heart
19	chr6:114145600-114147800	Enhancers	Adipose Nuclei	Adipose
20	chr6:114145600-114148000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:114145600-114148000	Enhancers	HSMM	muscle
22	chr6:114145800-114147000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:114145800-114147200	Enhancers	Brain Hippocampus Middle	brain
24	chr6:114145800-114147200	Enhancers	Left Ventricle	heart
25	chr6:114145800-114147400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:114145800-114147400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:114145800-114147400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:114145800-114147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:114145800-114147600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:114146000-114147400	Enhancers	Brain Substantia Nigra	brain
31	chr6:114146000-114147600	Enhancers	Osteobl	bone
32	chr6:114146000-114147800	Enhancers	Fetal Lung	lung
33	chr6:114146200-114146800	Weak transcription	Small Intestine	intestine
34	chr6:114146200-114147200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:114146200-114147400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:114146200-114147600	Enhancers	NHLF	lung
37	chr6:114146400-114147200	Enhancers	Fetal Brain Male	brain
38	chr6:114146400-114147400	Enhancers	Fetal Muscle Trunk	muscle
39	chr6:114146400-114147400	Enhancers	Right Ventricle	heart
40	chr6:114146400-114147400	Enhancers	Stomach Mucosa	stomach
41	chr6:114146400-114147800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:114146600-114147400	Enhancers	Brain Angular Gyrus	brain
43	chr6:114146600-114147400	Enhancers	Esophagus	oesophagus
44	chr6:114146600-114147400	Enhancers	Gastric	stomach
45	chr6:114146600-114147400	Enhancers	Psoas Muscle	Psoas
46	chr6:114146600-114147400	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr6:114146600-114147600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:114146600-114147600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr6:114146600-114147600	Enhancers	NHDF-Ad	bronchial
50	chr6:114146600-114147800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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