Variant report

Variant	rs2615529
Chromosome Location	chr6:114154472-114154473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1026635	0.97[ASN][1000 genomes]
rs1026636	0.97[ASN][1000 genomes]
rs1026640	0.97[ASN][1000 genomes]
rs1031797	0.98[ASN][1000 genomes]
rs1031798	0.98[ASN][1000 genomes]
rs1031800	0.81[ASN][1000 genomes]
rs13209042	0.97[ASN][1000 genomes]
rs1564063	0.96[ASN][1000 genomes]
rs1585564	0.97[ASN][1000 genomes]
rs17075611	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2018090	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2126461	0.98[ASN][1000 genomes]
rs2126462	0.98[ASN][1000 genomes]
rs2615508	0.95[ASN][1000 genomes]
rs2615518	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2615530	0.98[ASN][1000 genomes]
rs2615531	0.98[ASN][1000 genomes]
rs2615532	0.98[ASN][1000 genomes]
rs2615533	0.97[ASN][1000 genomes]
rs2695451	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2695452	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2753884	0.97[ASN][1000 genomes]
rs2810179	0.97[ASN][1000 genomes]
rs2810182	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2810187	0.97[ASN][1000 genomes]
rs2810188	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2810189	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2810191	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2810195	0.97[ASN][1000 genomes]
rs2810196	0.97[ASN][1000 genomes]
rs4945503	0.98[ASN][1000 genomes]
rs9374429	0.97[ASN][1000 genomes]
rs9387179	0.97[ASN][1000 genomes]
rs9398364	0.96[ASN][1000 genomes]
rs9400671	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9400672	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9400676	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs949599	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs959211	0.98[ASN][1000 genomes]
rs963884	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv3363275	chr6:114101331-114302866	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114147400-114154800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:114150600-114157200	Weak transcription	Pancreas	Pancrea
3	chr6:114151200-114158000	Weak transcription	Psoas Muscle	Psoas
4	chr6:114151600-114154600	Weak transcription	Osteobl	bone
5	chr6:114151800-114154600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:114151800-114154800	Weak transcription	NH-A	brain
7	chr6:114152600-114155000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:114154400-114156000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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