Variant report

Variant	rs2616459
Chromosome Location	chr4:18526194-18526195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12646058	0.84[ASN][1000 genomes]
rs12646743	0.82[ASN][1000 genomes]
rs16897142	0.89[ASN][1000 genomes]
rs16897144	0.89[ASN][1000 genomes]
rs2616460	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56708160	0.82[ASN][1000 genomes]
rs66763016	0.83[ASN][1000 genomes]
rs67249909	0.83[ASN][1000 genomes]
rs67996028	0.83[ASN][1000 genomes]
rs6838041	0.83[ASN][1000 genomes]
rs73232257	0.89[ASN][1000 genomes]
rs73248757	0.89[ASN][1000 genomes]
rs73248762	0.89[ASN][1000 genomes]
rs73248783	0.89[ASN][1000 genomes]
rs7668905	0.89[ASN][1000 genomes]
rs7671449	0.90[ASN][1000 genomes]
rs7673673	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7674800	0.82[ASN][1000 genomes]
rs906080	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18525600-18532200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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