Variant report

Variant	rs6838041
Chromosome Location	chr4:18541179-18541180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12507937	0.85[EUR][1000 genomes]
rs12507985	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12645896	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12646058	0.85[ASN][1000 genomes]
rs12646743	0.83[ASN][1000 genomes]
rs12648980	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16897040	0.83[EUR][1000 genomes]
rs16897142	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16897144	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2616459	0.83[ASN][1000 genomes]
rs2616460	0.83[ASN][1000 genomes]
rs4521343	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56708160	0.83[ASN][1000 genomes]
rs66763016	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67249909	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67551652	0.81[EUR][1000 genomes]
rs67996028	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6812499	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6828694	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73232257	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73248757	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73248762	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73248783	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73250405	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73250408	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7668905	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7671449	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7674800	0.83[ASN][1000 genomes]
rs906080	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966508	chr4:18541086-18557079	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6838041	FLJ33065	trans	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18538600-18541400	Weak transcription	HUVEC	blood vessel

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