Variant report

Variant	rs12646058
Chromosome Location	chr4:18444154-18444155
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12507937	0.84[EUR][1000 genomes]
rs12507985	0.82[EUR][1000 genomes]
rs12645896	0.81[EUR][1000 genomes]
rs12646743	0.98[ASN][1000 genomes]
rs12648980	0.81[EUR][1000 genomes]
rs16897040	0.81[EUR][1000 genomes]
rs16897142	0.89[ASN][1000 genomes]
rs16897144	0.89[ASN][1000 genomes]
rs2616459	0.84[ASN][1000 genomes]
rs2616460	0.84[ASN][1000 genomes]
rs4521343	0.81[EUR][1000 genomes]
rs56708160	0.98[ASN][1000 genomes]
rs66763016	0.85[ASN][1000 genomes]
rs67249909	0.85[ASN][1000 genomes]
rs67996028	0.85[ASN][1000 genomes]
rs6812499	0.81[EUR][1000 genomes]
rs6828694	0.82[EUR][1000 genomes]
rs6838041	0.85[ASN][1000 genomes]
rs6851547	0.92[ASN][1000 genomes]
rs6851929	0.93[ASN][1000 genomes]
rs73232257	0.89[ASN][1000 genomes]
rs73248757	0.89[ASN][1000 genomes]
rs73248762	0.89[ASN][1000 genomes]
rs73248783	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73250405	0.82[EUR][1000 genomes]
rs73250408	0.82[EUR][1000 genomes]
rs7668905	0.89[ASN][1000 genomes]
rs7671449	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7673673	0.93[ASN][1000 genomes]
rs7674800	0.98[ASN][1000 genomes]
rs906080	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18442800-18444600	Weak transcription	Fetal Intestine Large	intestine
2	chr4:18443000-18445000	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links