Variant report

Variant	rs73250408
Chromosome Location	chr4:18578018-18578019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18021849..18023611-chr4:18577415..18579435,2	MCF-7	breast:
2	chr4:18572634..18574587-chr4:18576721..18578540,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178177	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12507937	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507985	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12645896	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646058	0.82[EUR][1000 genomes]
rs12646232	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12646743	0.82[EUR][1000 genomes]
rs12648980	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16897040	0.90[EUR][1000 genomes]
rs16897142	0.92[EUR][1000 genomes]
rs16897144	0.92[EUR][1000 genomes]
rs4521343	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56708160	0.84[EUR][1000 genomes]
rs66763016	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67249909	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67551652	0.87[EUR][1000 genomes]
rs67996028	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6812499	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6828694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6838041	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73232257	0.92[EUR][1000 genomes]
rs73248757	0.93[EUR][1000 genomes]
rs73248762	0.92[EUR][1000 genomes]
rs73248783	0.96[EUR][1000 genomes]
rs73250405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668905	0.89[EUR][1000 genomes]
rs7671449	0.96[EUR][1000 genomes]
rs7684376	0.81[EUR][1000 genomes]
rs906080	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18574400-18579800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links