Variant report

Variant	rs16897040
Chromosome Location	chr4:18445090-18445091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18439763..18441872-chr4:18443790..18445400,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12507937	0.82[EUR][1000 genomes]
rs12507985	0.90[EUR][1000 genomes]
rs12645896	0.89[EUR][1000 genomes]
rs12646058	0.81[EUR][1000 genomes]
rs12646743	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12648980	0.89[EUR][1000 genomes]
rs16897142	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16897144	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4521343	0.89[EUR][1000 genomes]
rs56708160	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66763016	0.83[EUR][1000 genomes]
rs67249909	0.83[EUR][1000 genomes]
rs67551652	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67996028	0.83[EUR][1000 genomes]
rs6812499	0.89[EUR][1000 genomes]
rs6828694	0.90[EUR][1000 genomes]
rs6838041	0.83[EUR][1000 genomes]
rs6851547	0.84[EUR][1000 genomes]
rs6851929	0.81[EUR][1000 genomes]
rs73232257	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73248757	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73248762	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73248783	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73250405	0.90[EUR][1000 genomes]
rs73250408	0.90[EUR][1000 genomes]
rs7668905	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7671449	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7674800	0.87[EUR][1000 genomes]
rs7684376	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs906080	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1012283	chr4:18436363-18477654	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18444600-18446600	Enhancers	Fetal Intestine Large	intestine
2	chr4:18445000-18445400	Enhancers	Fetal Intestine Small	intestine

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