Variant report

Variant	rs12648980
Chromosome Location	chr4:18574313-18574314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18572634..18574587-chr4:18576721..18578540,2	MCF-7	breast:
2	chr4:18572671..18575375-chr4:18579658..18581431,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12507937	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12507985	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12645896	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12646058	0.81[EUR][1000 genomes]
rs12646232	0.97[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12646743	0.81[EUR][1000 genomes]
rs16897040	0.89[EUR][1000 genomes]
rs16897142	0.91[EUR][1000 genomes]
rs16897144	0.91[EUR][1000 genomes]
rs4521343	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56708160	0.84[EUR][1000 genomes]
rs66763016	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67249909	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67551652	0.86[EUR][1000 genomes]
rs67996028	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6812499	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6828694	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838041	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73232257	0.92[EUR][1000 genomes]
rs73248757	0.92[EUR][1000 genomes]
rs73248762	0.91[EUR][1000 genomes]
rs73248783	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73250405	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73250408	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7668905	0.88[EUR][1000 genomes]
rs7671449	0.95[EUR][1000 genomes]
rs7684376	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18568000-18574400	Enhancers	HepG2	liver
2	chr4:18571800-18574600	Enhancers	Fetal Intestine Large	intestine
3	chr4:18573600-18574400	Enhancers	Fetal Kidney	kidney

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