Variant report

Variant	rs2618091
Chromosome Location	chr11:76025889-76025890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76018771..76021180-chr11:76023775..76026508,2	MCF-7	breast:
2	chr11:76025405..76027275-chr11:76028551..76031168,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2618084	0.85[EUR][1000 genomes]
rs2618086	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2618088	0.81[EUR][1000 genomes]
rs2618089	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2851155	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851466	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2851467	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs736984	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs745870	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897930	chr11:75960472-76027936	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76020400-76026200	Enhancers	Fetal Lung	lung
2	chr11:76024400-76027000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr11:76024800-76026000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:76024800-76026000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:76024800-76026000	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr11:76024800-76026800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:76025000-76026600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:76025000-76026800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:76025000-76027000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:76025000-76027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:76025200-76026000	Enhancers	Adipose Nuclei	Adipose
12	chr11:76025200-76026000	Enhancers	NHDF-Ad	bronchial
13	chr11:76025200-76026400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:76025200-76026400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:76025200-76026800	Enhancers	HMEC	breast
16	chr11:76025200-76026800	Enhancers	NHEK	skin
17	chr11:76025400-76026400	Enhancers	NH-A	brain
18	chr11:76025400-76026600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:76025400-76027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:76025400-76029800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:76025600-76026400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:76025800-76028400	Weak transcription	Hela-S3	cervix
23	chr11:76025800-76029200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:76025800-76031200	Weak transcription	Placenta	Placenta

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