Variant report

Variant	rs2619107
Chromosome Location	chr10:118976295-118976296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118976223..118977870-chr10:118979893..118982882,2	K562	blood:
2	chr10:118976083..118976672-chr17:47633801..47634588,2	MCF-7	breast:
3	chr10:118976259..118976877-chr10:119323031..119323553,2	K562	blood:
4	chr10:118975183..118978653-chr10:118979198..118982710,3	MCF-7	breast:
5	chr10:118975747..118977593-chr10:119078147..119080329,46	MCF-7	breast:
6	chr10:118975832..118976436-chr12:44626834..44627700,2	MCF-7	breast:
7	chr10:118975993..118976717-chr10:119202046..119202670,2	K562	blood:
8	chr10:118975861..118976763-chr10:119237489..119238069,2	MCF-7	breast:
9	chr10:118973979..118977978-chr10:119077721..119080771,4	MCF-7	breast:
10	chr10:118975767..118976754-chr10:118986014..118987065,3	K562	blood:
11	chr10:118975266..118977159-chr10:119077947..119080264,23	MCF-7	breast:
12	chr10:118975358..118977652-chr10:119078316..119080186,2	MCF-7	breast:
13	chr10:118975902..118976717-chr10:120323880..120324813,2	MCF-7	breast:
14	chr10:118975857..118976368-chr19:3985563..3986371,2	MCF-7	breast:
15	chr10:118975767..118977026-chr10:119079220..119080275,10	K562	blood:
16	chr10:118975810..118976793-chr10:118986044..118987013,2	MCF-7	breast:
17	chr10:118975868..118977282-chr10:119208595..119209916,7	K562	blood:
18	chr10:118976194..118976966-chr10:119220862..119221486,2	K562	blood:
19	chr10:118975873..118976726-chr10:119221718..119222483,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11197926	0.88[AMR][1000 genomes]
rs11197927	0.88[AMR][1000 genomes]
rs11197928	0.90[AMR][1000 genomes]
rs2619104	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2619108	0.88[AMR][1000 genomes]
rs2803824	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2803825	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3026036	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118975400-118977200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118975600-118977600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr10:118975800-118976400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:118975800-118976400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:118975800-118976400	Enhancers	Primary B cells from cord blood	blood
6	chr10:118975800-118976400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
7	chr10:118975800-118976400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr10:118975800-118976400	Bivalent Enhancer	Placenta	Placenta
9	chr10:118975800-118976400	Enhancers	Lung	lung
10	chr10:118975800-118976400	Bivalent/Poised TSS	NH-A	brain
11	chr10:118975800-118976600	Bivalent/Poised TSS	HSMMtube	muscle
12	chr10:118975800-118977000	Bivalent/Poised TSS	Fetal Brain Female	brain
13	chr10:118975800-118977200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr10:118975800-118977200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
15	chr10:118975800-118977200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:118975800-118977200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:118975800-118977200	Enhancers	Spleen	Spleen
18	chr10:118976000-118976400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
19	chr10:118976000-118976400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:118976000-118976400	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:118976000-118976400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
22	chr10:118976000-118976400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:118976000-118976400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:118976000-118976400	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
25	chr10:118976000-118976400	Enhancers	Liver	Liver
26	chr10:118976000-118976400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
27	chr10:118976000-118976400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
28	chr10:118976000-118976400	Bivalent Enhancer	Fetal Heart	heart
29	chr10:118976000-118976400	Bivalent/Poised TSS	Psoas Muscle	Psoas
30	chr10:118976000-118976400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
31	chr10:118976000-118976400	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
32	chr10:118976000-118976400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
33	chr10:118976000-118976400	Bivalent/Poised TSS	NHEK	skin
34	chr10:118976000-118976600	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:118976000-118976600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:118976000-118976600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
37	chr10:118976000-118976600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
38	chr10:118976000-118976600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
39	chr10:118976000-118976600	Bivalent/Poised TSS	K562	blood
40	chr10:118976000-118976800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:118976000-118976800	Bivalent Enhancer	Left Ventricle	heart
42	chr10:118976000-118976800	Active TSS	Right Atrium	heart
43	chr10:118976000-118977000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:118976000-118977000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
45	chr10:118976000-118977000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr10:118976000-118977000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:118976000-118977000	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:118976000-118977000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:118976000-118977000	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr10:118976000-118977000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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