Variant report

Variant	rs2619108
Chromosome Location	chr10:118974784-118974785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10886049	0.81[CEU][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap]
rs11197925	0.90[CEU][hapmap];0.96[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap]
rs11197926	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11197927	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11197928	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17096146	1.00[YRI][hapmap]
rs2619107	0.88[AMR][1000 genomes]
rs3026036	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs363281	1.00[YRI][hapmap]
rs363301	1.00[YRI][hapmap]
rs363304	1.00[YRI][hapmap]
rs363305	1.00[YRI][hapmap]
rs363308	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs363309	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs363310	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs363311	0.90[CEU][hapmap];0.87[CHB][hapmap];0.95[EUR][1000 genomes]
rs363357	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118973200-118975600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:118974000-118974800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:118974000-118975000	Enhancers	A549	lung
4	chr10:118974000-118975200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:118974400-118975800	Weak transcription	Primary B cells from cord blood	blood
6	chr10:118974600-118974800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
7	chr10:118974600-118974800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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