Variant report

Variant	rs3026036
Chromosome Location	chr10:118957026-118957027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:118956998-118957048	PrEC	prostate:	n/a
2	chr10:118956998-118957048	ovcar-3	ovarian:	n/a
3	chr10:118956998-118957048	GM19239	blood:	n/a
4	chr10:118956998-118957048	HAEpiC	amniotic membrane:	n/a
5	chr10:118956998-118957048	HL-60	blood:	n/a
6	chr10:118956998-118957048	HEEpiC	esophagus:	n/a
7	chr10:118956998-118957048	BE2_C	brain:	n/a
8	chr10:118956998-118957048	NT2-D1	testis:	n/a
9	chr10:118956998-118957048	Jurkat	blood:	n/a
10	chr10:118956998-118957048	HNPCEpiC	eye:	n/a
11	chr10:118956998-118957048	HIPEpiC	eye:	n/a
12	chr10:118956998-118957048	HCT-116	colon:	n/a
13	chr10:118956998-118957048	LNCaP	prostate:	n/a
14	chr10:118956998-118957048	RPTEC	kidney:	n/a
15	chr10:118956998-118957048	HEK293	kidney:	embryo
16	chr10:118956998-118957048	T-47D	breast:	n/a
17	chr10:118956998-118957048	SAEC	small airway:	n/a
18	chr10:118956998-118957048	AG04450	lung:	fetal
19	chr10:118956998-118957048	AoSMC	blood vessel:	n/a
20	chr10:118956998-118957048	GM12878	blood:	n/a
21	chr10:118956998-118957048	HRPEpiC	eye:	n/a
22	chr10:118956998-118957048	Caco-2	colon:	n/a
23	chr10:118956998-118957048	AG09319	gingival:	n/a
24	chr10:118956998-118957048	A549	lung:	n/a
25	chr10:118956998-118957048	NH-A	brain:	n/a
26	chr10:118956998-118957048	NHDF-neo	bronchial:	n/a
27	chr10:118956998-118957048	HRE	kidney:	n/a
28	chr10:118956998-118957048	GM12892	blood:	n/a
29	chr10:118956998-118957048	IMR90	lung:	fetal
30	chr10:118956998-118957048	NHBE	bronchial:	n/a
31	chr10:118956998-118957048	Hepatocyte	liver:	n/a
32	chr10:118956998-118957048	HRCEpiC	kidney:	n/a
33	chr10:118956998-118957048	ProgFib	skin:	n/a
34	chr10:118956998-118957048	MCF10A-Er-Src	breast:	n/a
35	chr10:118956998-118957048	HCM	heart:	n/a
36	chr10:118956998-118957048	U87	brain:	n/a
37	chr10:118956998-118957048	SK-N-SH_RA	brain:	n/a
38	chr10:118956998-118957048	H1-hESC	embryonic stem cell:	embryo
39	chr10:118956998-118957048	PFSK-1	brain:	n/a
40	chr10:118956998-118957048	AG10803	skin:	n/a
41	chr10:118956998-118957048	Hela-S3	cervix:	n/a
42	chr10:118956998-118957048	CMK	blood:	n/a
43	chr10:118956998-118957048	AG04449	skin:	fetal
44	chr10:118956998-118957048	HCF	heart:	n/a
45	chr10:118956998-118957048	K562	blood:	n/a
46	chr10:118956998-118957048	SK-N-MC	brain:	n/a
47	chr10:118956998-118957048	AG09309	skin:	n/a
48	chr10:118956998-118957048	MCF-7	breast:	n/a
49	chr10:118956998-118957048	PANC-1	pancreas:	n/a
50	chr10:118956998-118957048	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000236171	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11197926	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197927	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11197928	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2619107	0.85[AMR][1000 genomes]
rs2619108	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs363311	0.93[EUR][1000 genomes]
rs363357	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118957000-118958000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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