Variant report

Variant	rs262220
Chromosome Location	chr3:68398539-68398540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510969	0.91[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1352853	0.95[CEU][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs1388500	0.81[TSI][hapmap]
rs1388506	0.83[MEX][hapmap]
rs1491746	0.91[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1491748	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap]
rs1510354	0.81[TSI][hapmap]
rs2313283	0.86[CEU][hapmap]
rs262217	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs262218	0.81[TSI][hapmap]
rs262219	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262249	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262251	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs262252	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665523	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap]
rs7613895	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs262220	ADRA1A	trans	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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