Variant report

Variant	rs262219
Chromosome Location	chr3:68396650-68396651
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10510969	0.86[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1352853	1.00[CEU][hapmap]
rs1388500	0.85[YRI][hapmap]
rs1388506	0.82[AMR][1000 genomes]
rs1491746	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs1491748	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1510354	0.82[YRI][hapmap]
rs2313283	0.90[CEU][hapmap]
rs262215	0.82[YRI][hapmap]
rs262217	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs262220	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262249	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262251	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs262252	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2665523	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6549118	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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