Variant report

Variant	rs6549118
Chromosome Location	chr3:68387656-68387657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1388500	0.81[CEU][hapmap];0.96[YRI][hapmap]
rs1388506	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1491745	0.88[CEU][hapmap]
rs1510354	0.81[CEU][hapmap];0.89[YRI][hapmap]
rs262214	0.81[CEU][hapmap]
rs262215	0.81[CEU][hapmap];0.93[YRI][hapmap]
rs262218	0.81[CEU][hapmap]
rs262219	0.86[YRI][hapmap]
rs262248	0.85[YRI][hapmap]
rs262250	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262251	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262252	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7613895	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1010992	chr3:68353191-68388825	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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