Variant report

Variant	rs262249
Chromosome Location	chr3:68404612-68404613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10510969	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs1352853	0.83[CEU][hapmap]
rs1491746	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs1491748	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs262217	0.87[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs262219	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs262220	0.87[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs262239	0.81[EUR][1000 genomes]
rs262240	0.81[EUR][1000 genomes]
rs262241	0.81[EUR][1000 genomes]
rs262242	0.81[EUR][1000 genomes]
rs262243	0.81[EUR][1000 genomes]
rs262244	0.81[EUR][1000 genomes]
rs262248	0.81[TSI][hapmap]
rs262251	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs262252	0.87[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.90[LWK][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2665523	0.87[CEU][hapmap];0.91[CHB][hapmap];0.90[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap]
rs63108	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv590562	chr3:68393781-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv590563	chr3:68402933-68422687	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68403200-68407800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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