Variant report

Variant	rs2623179
Chromosome Location	chr15:99741878-99741879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13853	1.00[JPT][hapmap]
rs1703775	1.00[JPT][hapmap]
rs260086	1.00[JPT][hapmap]
rs5030691	1.00[JPT][hapmap]
rs7170268	1.00[JPT][hapmap]
rs7176156	1.00[JPT][hapmap]
rs7176176	1.00[JPT][hapmap]
rs8031137	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1045124	chr15:99504843-99847210	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1038870	chr15:99510479-99768374	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
10	nsv1051782	chr15:99621061-99792967	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
14	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
15	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
17	nsv1052528	chr15:99736977-99874210	Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
18	esv2760374	chr15:99739048-99754071	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99673200-99789400	Weak transcription	Small Intestine	intestine
2	chr15:99697000-99756400	Weak transcription	Stomach Mucosa	stomach
3	chr15:99717400-99761000	Weak transcription	Gastric	stomach
4	chr15:99717800-99758000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:99718200-99749200	Weak transcription	HUVEC	blood vessel
6	chr15:99721200-99758400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:99721800-99742400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:99722000-99758400	Weak transcription	Right Ventricle	heart
9	chr15:99722400-99752200	Weak transcription	Osteobl	bone
10	chr15:99722600-99757600	Weak transcription	Psoas Muscle	Psoas
11	chr15:99723000-99749000	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:99724400-99769600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:99726000-99749400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:99726400-99742600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:99726600-99758200	Weak transcription	HMEC	breast
16	chr15:99728400-99760000	Weak transcription	NHDF-Ad	bronchial
17	chr15:99732800-99758000	Weak transcription	Spleen	Spleen
18	chr15:99732800-99761000	Weak transcription	Lung	lung
19	chr15:99733000-99758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:99733000-99760400	Weak transcription	Esophagus	oesophagus
21	chr15:99733200-99742400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr15:99733200-99751800	Weak transcription	A549	lung
23	chr15:99733200-99756800	Weak transcription	Aorta	Aorta
24	chr15:99733200-99758200	Weak transcription	Colonic Mucosa	Colon
25	chr15:99733400-99742600	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:99733400-99749000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:99733400-99752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:99733400-99787400	Weak transcription	NHEK	skin
29	chr15:99733800-99746200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:99734200-99752000	Weak transcription	Fetal Heart	heart
31	chr15:99734200-99758200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:99734400-99758000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:99734600-99757800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:99735200-99758200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr15:99737200-99752200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:99737200-99752600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:99737200-99755200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:99737200-99758000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr15:99737400-99758000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:99739200-99742800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr15:99739400-99742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr15:99739400-99752400	Weak transcription	NH-A	brain
43	chr15:99739400-99759200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:99739800-99757600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:99740000-99758400	Weak transcription	Hela-S3	cervix
46	chr15:99740200-99742000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:99740200-99742400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:99740200-99742400	Weak transcription	Fetal Lung	lung
49	chr15:99740200-99742600	Weak transcription	Brain Substantia Nigra	brain
50	chr15:99740200-99749200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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