Variant report

Variant	rs2624695
Chromosome Location	chr10:44549767-44549768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10508881	0.97[ASN][1000 genomes]
rs10793517	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899970	0.83[EUR][1000 genomes]
rs10899971	0.84[EUR][1000 genomes]
rs10899973	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238817	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238818	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11238822	0.84[EUR][1000 genomes]
rs12570314	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1352999	0.84[EUR][1000 genomes]
rs1472168	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1482478	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1873757	0.84[EUR][1000 genomes]
rs2047009	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2128363	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624694	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2639463	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2802490	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2804029	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2818904	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4412714	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4948815	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948818	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7903121	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9332446	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs955584	0.84[EUR][1000 genomes]
rs9804352	0.97[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44541200-44549800	Weak transcription	Left Ventricle	heart
2	chr10:44542400-44552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44543200-44552400	Weak transcription	Gastric	stomach
4	chr10:44547400-44552400	Weak transcription	Ovary	ovary
5	chr10:44548200-44552800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:44548600-44551800	Weak transcription	Pancreas	Pancrea
7	chr10:44549400-44553400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:44549600-44555800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links