Variant report

Variant	rs11238817
Chromosome Location	chr10:44527590-44527591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508881	0.95[ASN][1000 genomes]
rs10793515	0.90[AMR][1000 genomes]
rs10793516	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793517	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10899963	0.87[AMR][1000 genomes]
rs10899965	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899970	0.91[EUR][1000 genomes]
rs10899971	0.92[EUR][1000 genomes]
rs10899973	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238808	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11238818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11238822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12570314	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1352999	0.92[EUR][1000 genomes]
rs1472168	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1873756	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1873757	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2047009	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2128363	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2624694	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2624695	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2639463	0.84[EUR][1000 genomes]
rs2804029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2818904	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4412714	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948591	0.88[AMR][1000 genomes]
rs4948815	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948818	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090343	0.90[AMR][1000 genomes]
rs7091447	0.90[AMR][1000 genomes]
rs7478408	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7903121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9332446	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955584	0.92[EUR][1000 genomes]
rs9804352	0.95[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44511800-44537600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44525600-44529800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:44525800-44527600	Enhancers	Rectal Smooth Muscle	rectum
4	chr10:44525800-44529000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:44526000-44527600	Weak transcription	Aorta	Aorta
6	chr10:44526000-44529400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:44527000-44529800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:44527000-44529800	Enhancers	Osteobl	bone
9	chr10:44527200-44527800	Enhancers	Adipose Nuclei	Adipose
10	chr10:44527200-44528000	Enhancers	Pancreas	Pancrea
11	chr10:44527200-44528200	Enhancers	Right Atrium	heart
12	chr10:44527200-44528400	Enhancers	NHDF-Ad	bronchial

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