Variant report

Variant	rs11238808
Chromosome Location	chr10:44505391-44505392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10793515	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10793516	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793517	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10899963	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899965	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899971	0.80[EUR][1000 genomes]
rs10899973	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11238817	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11238818	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11238822	0.80[EUR][1000 genomes]
rs12570314	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1352999	0.80[EUR][1000 genomes]
rs1472168	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1873756	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1873757	0.80[EUR][1000 genomes]
rs2047009	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4412714	0.85[AMR][1000 genomes]
rs4948591	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4948815	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4948818	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7090343	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7091447	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7478408	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7903121	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9332446	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs955584	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44501000-44508400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr10:44501600-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44502200-44506800	Enhancers	Adipose Nuclei	Adipose
4	chr10:44502200-44507400	Enhancers	Fetal Muscle Leg	muscle
5	chr10:44502400-44506600	Enhancers	GM12878-XiMat	blood
6	chr10:44502600-44506200	Weak transcription	Fetal Brain Female	brain
7	chr10:44502600-44507800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr10:44503200-44505400	Weak transcription	Psoas Muscle	Psoas
9	chr10:44503200-44506400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:44503400-44507400	Enhancers	HUVEC	blood vessel
11	chr10:44503800-44505600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:44503800-44507200	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:44503800-44507400	Enhancers	Left Ventricle	heart
14	chr10:44504000-44513000	Weak transcription	Lung	lung
15	chr10:44504200-44506800	Enhancers	Osteobl	bone
16	chr10:44504400-44505400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr10:44504400-44508000	Enhancers	Fetal Brain Male	brain
18	chr10:44504600-44505400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:44504600-44505400	Weak transcription	Pancreas	Pancrea
20	chr10:44504600-44505400	Weak transcription	Right Atrium	heart
21	chr10:44504600-44506200	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:44504800-44505400	Enhancers	Fetal Thymus	thymus
23	chr10:44504800-44508200	Weak transcription	Spleen	Spleen
24	chr10:44504800-44509000	Enhancers	Ovary	ovary
25	chr10:44505000-44505600	Enhancers	NHDF-Ad	bronchial
26	chr10:44505000-44506600	Enhancers	Aorta	Aorta
27	chr10:44505200-44505400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:44505200-44506200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:44505200-44506600	Enhancers	Fetal Heart	heart
30	chr10:44505200-44506800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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