Variant report

Variant	rs2047009
Chromosome Location	chr10:44539913-44539914
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44537436..44540306-chr10:44543307..44545117,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508881	0.95[ASN][1000 genomes]
rs10793515	0.90[AMR][1000 genomes]
rs10793516	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10793517	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10899963	0.87[AMR][1000 genomes]
rs10899965	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10899970	0.91[EUR][1000 genomes]
rs10899971	0.92[EUR][1000 genomes]
rs10899973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238808	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11238817	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238818	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11238822	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12570314	0.96[CEU][hapmap];0.82[GIH][hapmap];0.98[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1352999	0.92[EUR][1000 genomes]
rs1472168	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1873756	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1873757	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2128363	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2624694	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2624695	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2639463	0.84[EUR][1000 genomes]
rs2804029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2818904	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4412714	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4948591	0.88[AMR][1000 genomes]
rs4948815	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4948818	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7090343	0.90[AMR][1000 genomes]
rs7091447	0.90[AMR][1000 genomes]
rs7478408	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7903121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9332446	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs955584	0.92[EUR][1000 genomes]
rs9804352	0.95[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44535400-44541400	Weak transcription	Pancreas	Pancrea
2	chr10:44538000-44542000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44538000-44542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:44538200-44541600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:44538200-44547000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44538800-44540400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:44539000-44540200	Enhancers	Psoas Muscle	Psoas
8	chr10:44539000-44540800	Enhancers	Adipose Nuclei	Adipose
9	chr10:44539000-44543200	Enhancers	Fetal Muscle Leg	muscle
10	chr10:44539000-44543800	Enhancers	Fetal Stomach	stomach
11	chr10:44539200-44540200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:44539200-44540400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44539200-44542000	Enhancers	Stomach Smooth Muscle	stomach
14	chr10:44539200-44543200	Enhancers	Ovary	ovary
15	chr10:44539400-44542200	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:44539400-44546800	Weak transcription	Right Ventricle	heart
17	chr10:44539600-44540000	Enhancers	Osteobl	bone
18	chr10:44539600-44540200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:44539600-44540400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr10:44539600-44540600	Enhancers	Fetal Brain Male	brain
21	chr10:44539600-44540600	Enhancers	Left Ventricle	heart
22	chr10:44539600-44542600	Enhancers	NHDF-Ad	bronchial
23	chr10:44539600-44543200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:44539800-44540200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr10:44539800-44541200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:44539800-44542200	Enhancers	HSMMtube	muscle
27	chr10:44539800-44543400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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