Variant report
| Variant | rs4948591 |
|---|---|
| Chromosome Location | chr10:44490414-44490415 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10793515 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10793516 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10793517 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10899963 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10899965 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10899973 | 0.88[AMR][1000 genomes] |
| rs11238808 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11238817 | 0.88[AMR][1000 genomes] |
| rs11238818 | 0.88[AMR][1000 genomes] |
| rs12570314 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
| rs1472168 | 0.85[AMR][1000 genomes] |
| rs1873756 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2047009 | 0.88[AMR][1000 genomes] |
| rs4412714 | 0.82[AMR][1000 genomes] |
| rs4948815 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4948818 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7090343 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7091447 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7478408 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7903121 | 0.88[AMR][1000 genomes] |
| rs9332446 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv466884 | chr10:44473036-44515130 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv550698 | chr10:44473036-44515130 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv521308 | chr10:44490414-44490532 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44490000-44494000 | Weak transcription | Spleen | Spleen |
