Variant report

Variant	rs2631255
Chromosome Location	chr4:102849920-102849921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10050084	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10856964	0.86[EUR][1000 genomes]
rs12505747	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13113677	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1809578	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2112139	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2631242	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2631252	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631253	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2631256	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2631271	0.82[EUR][1000 genomes]
rs2631274	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2850374	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2850384	0.82[EUR][1000 genomes]
rs2851325	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2851327	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2851335	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851337	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2903274	0.82[EUR][1000 genomes]
rs4099101	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4235403	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4337734	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4385063	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6532976	0.86[EUR][1000 genomes]
rs6532977	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532979	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs727086	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7694392	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs918363	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752360	chr4:102790822-102888822	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1000089	chr4:102846944-102871081	Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102836000-102868400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr4:102839200-102852600	Strong transcription	Primary B cells from cord blood	blood
3	chr4:102849000-102850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:102849600-102850000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:102849600-102850000	Bivalent Enhancer	HSMMtube	muscle
6	chr4:102849600-102850200	Enhancers	Brain Germinal Matrix	brain
7	chr4:102849800-102850000	Enhancers	Brain Anterior Caudate	brain
8	chr4:102849800-102850200	Active TSS	Brain Hippocampus Middle	brain

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