Variant report

Variant	rs2851327
Chromosome Location	chr4:102874770-102874771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:102874020..102874843-chr4:102891401..102892080,2	MCF-7	breast:
2	chr4:102860897..102862820-chr4:102873982..102876353,2	MCF-7	breast:
3	chr4:102872789..102875813-chr4:102887302..102889181,3	MCF-7	breast:
4	chr4:102842276..102843131-chr4:102874015..102874871,3	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10050084	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10856964	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12505747	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640056	0.87[JPT][hapmap]
rs13113677	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17031983	0.88[JPT][hapmap]
rs1809578	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2112139	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2631242	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631251	0.87[AFR][1000 genomes]
rs2631252	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2631253	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2631255	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2631256	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2631271	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2631274	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2850374	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2850384	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851318	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851325	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851330	0.91[AFR][1000 genomes]
rs2851331	0.91[AFR][1000 genomes]
rs2851335	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2851337	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2903274	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4099101	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4235403	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4337734	0.83[EUR][1000 genomes]
rs4385063	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4550925	0.83[ASN][1000 genomes]
rs6532976	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6532977	0.80[EUR][1000 genomes]
rs6532979	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6812110	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs6812874	0.85[AFR][1000 genomes]
rs6842661	0.88[JPT][hapmap]
rs727086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666312	0.91[AFR][1000 genomes]
rs7694392	0.82[EUR][1000 genomes]
rs918363	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9790772	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752360	chr4:102790822-102888822	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102866200-102875400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:102869400-102889200	Strong transcription	Primary B cells from peripheral blood	blood
3	chr4:102870400-102875600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:102872200-102874800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:102872200-102875200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:102872200-102883400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:102872400-102874800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:102872400-102875200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:102872800-102874800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:102873200-102883600	Strong transcription	Primary B cells from cord blood	blood
11	chr4:102873600-102875800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:102873600-102876800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:102873800-102875000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr4:102873800-102876000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr4:102873800-102876000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:102874000-102874800	Enhancers	A549	lung
17	chr4:102874000-102877600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:102874200-102875800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr4:102874200-102878000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:102874400-102875000	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr4:102874400-102875000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:102874400-102877800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:102874600-102876400	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr4:102874600-102876600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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