Variant report

Variant	rs6812874
Chromosome Location	chr4:102839008-102839009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10050084	0.88[AFR][1000 genomes]
rs10212684	0.96[ASN][1000 genomes]
rs10212686	0.96[ASN][1000 genomes]
rs10516482	0.90[ASN][1000 genomes]
rs11097756	0.88[ASN][1000 genomes]
rs11734196	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11737723	0.96[ASN][1000 genomes]
rs12331846	0.96[ASN][1000 genomes]
rs12641899	0.96[ASN][1000 genomes]
rs12647710	0.90[ASN][1000 genomes]
rs12647741	0.96[ASN][1000 genomes]
rs12647829	0.96[ASN][1000 genomes]
rs13113677	0.88[AFR][1000 genomes]
rs17031724	0.92[ASN][1000 genomes]
rs1809578	0.94[AFR][1000 genomes]
rs1862128	0.89[ASN][1000 genomes]
rs2112139	0.82[AFR][1000 genomes]
rs2544569	0.94[ASN][1000 genomes]
rs2631251	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2631252	0.85[AFR][1000 genomes]
rs2631253	0.85[AFR][1000 genomes]
rs2850374	0.91[YRI][hapmap]
rs2851314	0.92[ASN][1000 genomes]
rs2851315	0.96[ASN][1000 genomes]
rs2851317	0.91[AMR][1000 genomes]
rs2851325	0.84[AFR][1000 genomes]
rs2851327	0.85[AFR][1000 genomes]
rs2851330	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851331	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851335	0.85[AFR][1000 genomes]
rs4317207	0.92[ASN][1000 genomes]
rs4544711	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4624656	0.94[ASN][1000 genomes]
rs6812110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6849308	0.89[ASN][1000 genomes]
rs727086	0.85[AFR][1000 genomes]
rs7663733	0.96[ASN][1000 genomes]
rs7666312	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs918363	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2752360	chr4:102790822-102888822	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102836000-102868400	Strong transcription	Primary B cells from peripheral blood	blood
2	chr4:102837000-102839200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:102838000-102841800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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