Variant report

Variant	rs2851318
Chromosome Location	chr4:102915668-102915669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102913976..102916173-chr4:102919455..102922403,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10050084	0.82[ASN][1000 genomes]
rs12640056	0.87[JPT][hapmap]
rs13113677	0.82[ASN][1000 genomes]
rs17031983	0.88[JPT][hapmap]
rs1809578	0.82[ASN][1000 genomes]
rs2112139	0.84[EUR][1000 genomes]
rs2631242	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2631253	0.81[ASN][1000 genomes]
rs2631256	0.81[ASN][1000 genomes]
rs2631271	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2631274	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2850374	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2850384	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2851325	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851327	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2851337	0.82[ASN][1000 genomes]
rs2903274	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4099101	0.82[ASN][1000 genomes]
rs6842661	0.88[JPT][hapmap]
rs727086	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs918363	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv999861	chr4:102576115-102930562	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2757945	chr4:102662699-103008940	Genic enhancers Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2759269	chr4:102662699-103008940	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011180	chr4:102685236-102985945	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv537202	chr4:102685236-102985945	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv2757074	chr4:102772861-102933949	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:102913000-102916000	Genic enhancers	Primary B cells from cord blood	blood
2	chr4:102913600-102915800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:102913800-102915800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:102914200-102916000	Enhancers	Fetal Lung	lung
5	chr4:102914800-102916600	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr4:102915000-102916000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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