Variant report

Variant	rs2635108
Chromosome Location	chr6:75077150-75077151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1358880	1.00[ASW][hapmap]
rs2246936	0.82[EUR][1000 genomes]
rs278331	0.90[EUR][1000 genomes]
rs278333	0.90[EUR][1000 genomes]
rs523311	0.93[EUR][1000 genomes]
rs666415	0.93[EUR][1000 genomes]
rs6913433	0.90[EUR][1000 genomes]
rs795859	0.97[EUR][1000 genomes]
rs9343145	0.88[ASN][1000 genomes]
rs9343146	0.88[ASN][1000 genomes]
rs9350535	0.88[ASN][1000 genomes]
rs9350539	0.84[ASN][1000 genomes]
rs9359085	0.83[ASN][1000 genomes]
rs9359086	0.82[ASN][1000 genomes]
rs9360790	0.87[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758061	chr6:74961996-75128165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759442	chr6:74961996-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv35015	chr6:75031337-75154143	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757178	chr6:75060947-75162222	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75072400-75079200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:75076000-75077200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:75076000-75077200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:75076000-75077200	Enhancers	NHDF-Ad	bronchial
5	chr6:75076200-75077200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:75076200-75077200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:75076200-75078200	Weak transcription	NHLF	lung
8	chr6:75076400-75078200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:75076400-75079200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:75076800-75079000	Weak transcription	NHEK	skin
11	chr6:75076800-75079200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:75077000-75077200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:75077000-75078200	Weak transcription	Osteobl	bone
14	chr6:75077000-75078800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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