Variant report
| Variant | rs263631 |
|---|---|
| Chromosome Location | chr9:17002171-17002172 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1487504 | 0.84[ASN][1000 genomes] |
| rs1487505 | 0.84[ASN][1000 genomes] |
| rs1487507 | 0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2243759 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2481550 | 0.84[ASN][1000 genomes] |
| rs263630 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs263641 | 1.00[EUR][1000 genomes] |
| rs263642 | 0.86[ASN][1000 genomes] |
| rs263643 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs263644 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs263646 | 0.89[ASN][1000 genomes] |
| rs263654 | 0.82[ASN][1000 genomes] |
| rs263656 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs369409 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs379207 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs406268 | 0.97[ASN][1000 genomes] |
| rs436904 | 1.00[EUR][1000 genomes] |
| rs442438 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7034866 | 1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7040415 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs986473 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024799 | chr9:16631890-17431827 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2764141 | chr9:16903446-17351711 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv466268 | chr9:16958700-17002275 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv613691 | chr9:16958700-17002275 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv613692 | chr9:16963863-17070633 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:16997600-17004600 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 2 | chr9:17002000-17002200 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
