Variant report

Variant	rs7034866
Chromosome Location	chr9:16987880-16987881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1487507	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2243759	1.00[EUR][1000 genomes]
rs263630	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs263631	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs263641	1.00[EUR][1000 genomes]
rs263642	0.81[ASN][1000 genomes]
rs263643	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs263644	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs263646	0.84[ASN][1000 genomes]
rs263656	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs369409	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs379207	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs406268	0.88[ASN][1000 genomes]
rs436904	1.00[EUR][1000 genomes]
rs442438	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7040415	1.00[EUR][1000 genomes]
rs986473	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv466268	chr9:16958700-17002275	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv613691	chr9:16958700-17002275	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1034657	chr9:16963863-16992325	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16984400-16988000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:16986000-16988400	Enhancers	Dnd41	blood
3	chr9:16986200-16988400	Enhancers	Aorta	Aorta
4	chr9:16986400-16988400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:16986600-16988000	Enhancers	Osteobl	bone
6	chr9:16986800-16988000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:16987000-16988000	Enhancers	NHEK	skin
8	chr9:16987200-16988200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:16987400-16992000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr9:16987600-16988600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:16987600-16989800	Weak transcription	Esophagus	oesophagus
12	chr9:16987800-16988000	Bivalent Enhancer	NHDF-Ad	bronchial
13	chr9:16987800-16988200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:16987800-16988400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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