Variant report

Variant	rs406268
Chromosome Location	chr9:16997535-16997536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1487504	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1487505	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs1487507	0.97[ASN][1000 genomes]
rs2481550	0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs263630	1.00[ASN][1000 genomes]
rs263631	0.97[ASN][1000 genomes]
rs263641	0.80[ASN][1000 genomes]
rs263642	0.88[ASN][1000 genomes]
rs263643	0.88[ASN][1000 genomes]
rs263644	0.88[ASN][1000 genomes]
rs263646	0.91[ASN][1000 genomes]
rs263654	0.84[ASN][1000 genomes]
rs263656	0.97[ASN][1000 genomes]
rs369409	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs379207	1.00[ASN][1000 genomes]
rs436904	0.80[ASN][1000 genomes]
rs442438	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7034866	0.88[ASN][1000 genomes]
rs7040415	0.80[ASN][1000 genomes]
rs986473	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv466268	chr9:16958700-17002275	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	nsv613691	chr9:16958700-17002275	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16996200-16997600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr9:16997000-16997800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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