Variant report

Variant	rs263688
Chromosome Location	chr2:211046446-211046447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1111193	0.83[YRI][hapmap]
rs1990513	0.83[YRI][hapmap]
rs2080158	0.83[YRI][hapmap]
rs2192323	0.83[YRI][hapmap]
rs2243769	0.90[YRI][hapmap]
rs2539868	0.91[YRI][hapmap]
rs263671	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263677	0.83[YRI][hapmap]
rs263684	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2887881	0.83[YRI][hapmap]
rs4673502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7573093	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211037000-211046600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:211037200-211046800	Weak transcription	Left Ventricle	heart
3	chr2:211037200-211049600	Weak transcription	Aorta	Aorta
4	chr2:211038000-211049200	Weak transcription	Liver	Liver
5	chr2:211039200-211046600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:211043200-211053000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:211044000-211046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:211044600-211046600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:211044600-211046600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:211044600-211047000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:211044600-211047200	Enhancers	Fetal Lung	lung
12	chr2:211045000-211047000	Enhancers	Gastric	stomach
13	chr2:211045000-211047200	Enhancers	Fetal Thymus	thymus
14	chr2:211045200-211046800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr2:211045200-211047000	Enhancers	Primary T cells from cord blood	blood
16	chr2:211045600-211046600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:211045600-211046800	Enhancers	Pancreas	Pancrea
18	chr2:211045600-211047200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr2:211045800-211046800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:211045800-211046800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr2:211045800-211046800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr2:211045800-211046800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:211045800-211046800	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr2:211045800-211046800	Flanking Active TSS	Dnd41	blood
25	chr2:211045800-211047000	Enhancers	H1 Cell Line	embryonic stem cell
26	chr2:211045800-211047000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr2:211045800-211047000	Enhancers	Stomach Mucosa	stomach
28	chr2:211046000-211046800	Enhancers	Small Intestine	intestine
29	chr2:211046000-211047200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr2:211046200-211046600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr2:211046200-211046600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr2:211046200-211046600	Active TSS	HepG2	liver
33	chr2:211046200-211046800	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr2:211046200-211047000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr2:211046400-211046600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:211046400-211046600	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr2:211046400-211046600	Enhancers	Thymus	Thymus
38	chr2:211046400-211046800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr2:211046400-211046800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
40	chr2:211046400-211046800	Bivalent Enhancer	Fetal Stomach	stomach
41	chr2:211046400-211047000	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links