The 2.0 version of rSNPBase

Variant report

Variant rs263983
Chromosome Location chr1:45393513-45393514
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45347600-45410800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:45350800-45411800 Weak transcription Left Ventricle heart
3 chr1:45355800-45411200 Weak transcription Fetal Lung lung
4 chr1:45356000-45407000 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:45356000-45423800 Weak transcription Thymus Thymus
6 chr1:45357400-45411800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr1:45358200-45396800 Weak transcription Fetal Intestine Small intestine
8 chr1:45359000-45411800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:45359200-45396800 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr1:45359200-45423600 Weak transcription Primary T cells fromperipheralblood blood
11 chr1:45360600-45410000 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:45360800-45396800 Weak transcription Primary B cells from cord blood blood
13 chr1:45362200-45424200 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:45362400-45397000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr1:45369400-45396800 Weak transcription Stomach Smooth Muscle stomach
16 chr1:45373000-45411600 Weak transcription HepG2 liver
17 chr1:45374400-45396600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:45375200-45411800 Weak transcription Aorta Aorta
19 chr1:45378200-45412000 Weak transcription Brain Hippocampus Middle brain
20 chr1:45378400-45396600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:45378600-45412200 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:45384600-45412600 Weak transcription Psoas Muscle Psoas
23 chr1:45384800-45406800 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:45386200-45406600 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:45386400-45411600 Weak transcription Fetal Kidney kidney
26 chr1:45387200-45405800 Weak transcription Primary T helper cells fromperipheralblood blood
27 chr1:45387800-45413000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr1:45387800-45413200 Weak transcription Spleen Spleen
29 chr1:45388200-45408400 Weak transcription HUES64 Cell Line embryonic stem cell
30 chr1:45388400-45412800 Weak transcription Brain Germinal Matrix brain
31 chr1:45389000-45405600 Weak transcription Rectal Mucosa Donor 31 rectum
32 chr1:45389000-45412600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:45389200-45407400 Weak transcription Brain Substantia Nigra brain
34 chr1:45389200-45412800 Weak transcription Brain Anterior Caudate brain
35 chr1:45389200-45450200 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr1:45389600-45404000 Weak transcription Fetal Brain Female brain
37 chr1:45389800-45412400 Weak transcription Brain Inferior Temporal Lobe brain
38 chr1:45390200-45394400 Weak transcription Fetal Brain Male brain
39 chr1:45390400-45426200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr1:45390600-45411800 Weak transcription Brain Cingulate Gyrus brain
41 chr1:45391000-45393600 Enhancers NHDF-Ad bronchial
42 chr1:45391000-45396800 Weak transcription H1 Cell Line embryonic stem cell
43 chr1:45391000-45406400 Weak transcription Esophagus oesophagus
44 chr1:45391000-45411800 Weak transcription HSMMtube muscle
45 chr1:45391200-45394800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:45391200-45396800 Weak transcription NHEK skin
47 chr1:45391200-45397000 Weak transcription HMEC breast
48 chr1:45391200-45403000 Weak transcription A549 lung
49 chr1:45391200-45406200 Weak transcription Duodenum Mucosa Duodenum
50 chr1:45391200-45411600 Weak transcription Colon Smooth Muscle Colon

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Last update: Aug 31, 2015